Abstract:In order to clarify the variations in population genetic patterns of Acrossocheilus wenchowensis in the Xin’an Basin, 170 individuals from 6 different geographic populations were collected. Subsequent analyses of population genetic structure and historical demography were carried out using the mitochondrial DNA cytochrome b (mtDNA cyt b) gene. The results suggested that the genetic diversity of different geographic populations varied greatly, and that of A. wenchowensis was low. Whereas different levels of genetic differentiation were detected among the 6 populations, molecular genetic variation was mainly detected within populations owing to the short divergence time. Population expansion had occurred approximately 3.35 million years ago, while the global temperature was freezing. The expansion had not been affected by low temperatures. Therefore, the Xin’an Basin may have been a potential refuge during the glacial period. Reconstruction of the ancient area suggested that the Shuaishui and Lian rivers may have been the areas of A. wenchowensis origin in the Xin’an Basin. After population diffusion, isolation, and differentiation, the current distribution patterns emerged. The identification of the original population provides a theoretical basis for the conservation of A. wenchowensis in the Xin’an Basin.